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User Guides Index
Computer Usage
Computer Usage Users Guides are meant to
help you understand the basics, as well as some further concepts in
using the CBIF Computer Cluster. The cluster requires a certain amount
of understanding of UNIX operating systems, in which case a little
knowledge of the command line can help tremendously. The below links
can be used to access help regarding these kind of topics.
Unix Help
This
category will take you to a number of different user guides, from basic
UNIX commands, getting to know the graphical desktop used, as well as how to perform certain tasks in UNIX.
Remote Access
This link will help you understand how to
remotely log into the CBIF cluster and work on it from a different
machine. File transfers, command line, as well as graphical remote
programs are covered here (programs include ssh, VNC, putty, etc.).
Data Management and Manipulation
The following links refer to anything pertaining to data storage and management. This entails mainly databases and such.
Relational Databases
This link will lead to a
number of guides explaining basics as well as more complex concepts of
databases (user guides in this section include theoretical issues of databases, PostGreSQL, etc.).
Statistical Data Analysis and Graphics
In this folder you will find programs dealing both with statistical data analysis, graphics, and image manipulation.
Application-Based User Guides
Below, you will find links to categories pertaining to certain applications which are grouped based on their usability.
Geographic Information Systems
This link will take you to GIS applications, such as QGIS, GRASS,
interfaces between GIS and other types of programs, and other related
topics.
Phylogenetic Analysis
This folder contains a number of program guides useful in tasks
relating to phylogenetic analysis, such as comparisons of sequences,
analysis of gene families, and the investigation of evolutionary
relationships between different organisms.
Molecular Sequence Analysis
This folder deals with Molecular Sequence Analysis, such as alignments, translations of sequences, statistical analysis of hydrophobicity, etc.
CBIF Management
the below link leads you to a folder containing information about how to figure out CBIF and solve problems previously encountered by other editors.CBIF Help
by clicking the above link, you will find help concerning editing and managing sites and folders within CBIF.