Tutorials Index
The following links direct you to either workflows or program user guides
TUTORIALS MAIN PAGE
Workflows
The above link leads to a site which features a number of examples of how certain tasks can be managed by combining programs of similar but not identical usability.
User Guides
On the site the above link leads you to, you will find user manuals meant to help you understand the programs and learn how to use them more quickly.
Phylogenetics Discussion Group
The above link leads to papers and objects used by the phylogenetics discussion and work group.