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Phylogenetic Analysis

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The analysis of the taxonomical classification of organisms based on how closely they are related in terms of evolutionary differences.
BEAST
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models.
POY
Phylogenetic Analysis of DNA and other Data using Dynamic Homology
Phylip
PHYLIP is a free package of programs for inferring phylogenies
Treetool
Treetool is an interactive tool for displaying, editing, and printing phylogenetic trees.
Paup
Phylogenetic Analysis using Parsimony

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