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Molecular Sequence Analysis
Up one levelA variety of software is available for analyzing molecular sequences. This includes alignment of sequences and construction of phylogenetic trees.
- Jemboss/ EMBOSS
- The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web.
- ClustalX
- It is an X windows interface for the ClustalW multiple sequence alignment program.
- ClustalW
- It is a general purpose program that identifies alignments within multiple DNA or protein sequences.
- BEAST
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models.